TITLE Petunia vein-clearing virus: A
plant pararetrovirus with the core
sequences for an integrase function
JOURNAL Virology 236 (1), 137-146 (1997)
MEDLINE 97446347
REFERENCE 2 (bases 1 to 7205)
AUTHORS Richert-Poeggeler,K.R. and Shepherd,R.J.
TITLE Direct Submission
JOURNAL Submitted (26-MAR-1997) Agronomy, University
of Kentucky,
Lexington, KY 40546-0091, USA
FEATURES
Location/Qualifiers
source
1..7205
/organism="petunia vein clearing virus"
/specific_host="petunia hybrida"
/db_xref="taxon:59504"
BASE COUNT 2399 a 1458 c
1272 g 2076 t
ORIGIN
1 tggtatcaga gccatccatt
ttgttgaggg aggaaacatt tctcaccatg atgacttctc
61 cttctgatta tcaatccaat tcctctctag
ctaccactta ttctaatgca cctaaactct
121 ctaaagcttt gtctaataaa tatgactacc
tttatgaagt agatatcctt aaagaaaacc
181 aaaaaatatc agatacctat cttcctttgt
taaatcctta ctctgctttt gcaaagagat
241 ccgttactcc ttggtctcag atccgttctt
tagttcagtc taagcctcgc catgtgaaag
301 aatatgttgc tgcttctaaa ttagatcagc
atcctgtttt tgctacagga gaagaacagt
361 ttgttactct acatattcca gaagaatttg
cttctcactg gaaatcccac caattcactc
421 atatccactt tggtgctgtt aaaattgccc
ttacctacca tggaataaag ggtcaacctg
481 ttgttgccag attagcactc ttagatacta
gatatcttga gtaccaacat gctaatcttg
541 gaactgctga aatcactctc aacgcaggca
cagtcttcat tactctcttt cctaacttta
601 ccatgtcttt atcagacgcc aatctgtcca
cagccttaaa aatccaagtc caaatccaag
661 gagctcccct tacaaaagac tccatccagg
caactttaca ttaccaaatt gcatggcgtg
721 tccaaaatca tgctatggat ttgactctcc
ctggaggtga ggaagccttg ttccttaaaa
781 ttgatgctgg aaatggagcc acccaatgta
cccaagtccc tagacagttg tcaaaagaag
841 atctaatcaa aatactgcct gattcttggg
taacaaatta tgaaaagtta aaggaaccag
901 aagaacctct ccgttccact gaagtctcaa
tgtcaaagag acatgataaa tcagtagcta
961 tcagttttga tcattcccat tataagaagc
tcagaaacac ccatcacttc atgggtatga
1021 tttcagatga tgtcattgtc ttggatgatc ctgaaacttt
ttccaaaact cttccatctc
1081 tcatgcaaac tcatgattgg atccatcatt tccaacttga
tggacgtgct gtatcatggt
1141 ataaagatcc ttttgatggt cattgtccat gggatattga
ttgccaatgt tattcttgtt
1201 tatacagtga agatgaagag gattttgaag atggatttcc
tacaaaatac aaagggattc
1261 ccagaccagg aagtattgct gaaagaaaga tgcaagaaga
agttaatctc aagaaacttt
1321 atgaggataa ggatcctttt gtggggtcat tgagcaggcc
aggcaaatat gagtatctcg
1381 ttagatacga tgccccatct tgggcaaaag atcctcatct
gacagtggag ccaacaggtt
1441 gggatagtga tgaaccaatt caacctaagc aaccattcat
aaccagaaat accttgccaa
1501 aaatttacat gttcaaccca ctcaattatg aaaacaactt
tccaccttta tcatcatttt
1561 ctaaagatgg tgcagatcat actccaaaaa ttccaaagag
aaatgttgtt ttaccatctg
1621 gtacaaaaga cccaactggt gatcttgagg caactgtaaa
ttggcaaaca gaaaatgctt
1681 tggctcagaa taggatgtta acaaccattg ataggaccct
caaggagact gtaaccaagg
1741 ttgatagggt cacagatcag tcctcaaaaa atcaaggtct
tatcagagtt ctcgaacaac
1801 agctccaaga ccttaacaag aggatttgtc ccccaggaac
atccttgttt cacttctttg
1861 atcaacaaaa gagtgaaatg gcatccctta aagaacaaat
cagacttctc aaagaacaac
1921 cacagaaaaa tgaaactgat accccatctt accagtcctc
atatcagcct tttcataatt
1981 tctcttcccc atacatgccc tcaaatccgc ctaactcacc
gttcacaaat tttgcaaata
2041 ctccacaacc acaaccttct cttttttctc aatatccaat
acagccaaaa tccccaaata
2101 cctttgactt agccaaacta gtctgggaga aaaaagatgc
aattgctgca gaaaaaagag
2161 ccaagaagaa actacaaaaa gatgaggtaa aacaaaaaac
ttctttacct ccagaatcaa
2221 aaaggccaga tccccagtct agcagtcacc ttggtgatca
gttcatgatt tctgatccag
2281 ctttaccaaa agtttacgcg ctgaatgaac cttcagctcc
ttcggaagat acatcctccc
2341 aatcatacat cagtactgaa gaatcagtag aagacacaga
ctctttctct gtagtctcgg
2401 aagaatcaac ccaactttct caactctcca gttcttctaa
tgattcacca gaaaacaatg
2461 aaaatacact acctcagacc tttatggttc gtccaactga
accggaaata tctgaagttg
2521 aagatgaggt agatggtatg actgaggaac caatccctga
aagaagacct gaaatcactc
2581 cacctaagat ggttggcaca ggctttcaca ctttcagcct
agatgatatt tccattacca
2641 aatggcctga aagaattcag gatttccaca catggatgct
cactaaacaa ctggtggaaa
2701 gagaaccatt cttaatcctg tcagaattca cagcaagatt
gtcaggaaca cttcgagaat
2761 ggtggaattc tgtaggacca gatgacaaaa acaggttctt
gacttctcaa gacttcacat
2821 ggaatattag aatactttat tcttatttct gtggagatca
aagtcaaaac aaggaagaac
2881 tcaggagaca aatcttcgag atgaagtgtt tgtcttatga
caggaagaaa atagatcgtc
2941 atttccaaag aatgatcaag ctcttttatc acattggagg
agatatttct ttaaagcaag
3001 ccttcatatc ttcccttccc cccattttat cagaaaggat
ctctgccttg ataaaagaaa
3061 ggggtacttc agttacacaa atgcatgttg gagatattag
gcaaacggct ttttacgtcc
3121 ttgatgatct ctgtagcaaa agaaaattct tcaaccaaat
gaagaagatg tctagagatc
3181 tggaaaaagc atgcaccaaa tctgacctta ttattaaggg
tgataaagga tgttcaggct
3241 attgtaacct tcaagaagaa ggaaatacaa gcgcttcaaa
cttcctagct tcaaggaacg
3301 agatggcagg caatacagga aaagaaggag gtttttcaga
aaaagcaaaa caagcaagtc
3361 gatgaggcaa aagcctagat cttgttttac atgtgggaaa
attggtcact tctccagaaa
3421 ctgcccccaa aacaagaagt caataaaatt gatttctgaa
atccaaaagt atactggaat
3481 tgatattgaa gatgacctgg agtctgtttt ctcaattgag
gatgaaccca gtgaggatac
3541 attattctcg ctagagtttt atgaagaata tgcaggggag
caataccaga tcacttctta
3601 tgaagctcca aaaacagaaa accccccatt gcctaaaatc
cacaccattg ttgaaatacc
3661 acaaacagag gtcaaagtct acacctctaa atgggataag
cctatctcag tcattgcttt
3721 ttatgataca ggagcggcct attcaattat ggatccagca
attcttccat ctgaatattg
3781 gattccgcat ttcaggcact ttggaacggc tgatgatggt
attttgacaa ccacagtcaa
3841 aaccaagcat cccattacaa ttgaattctt cccaggcttc
aagtacacta caaaattgtt
3901 gggatcagat attcctggaa aagatctgct cattggattt
gatatctaca gacagcttaa
3961 taataagctt cgcattggag cagatggaat cagatggaaa
aaccagttca aaaggtatac
4021 tgaaatacca cgacttttcc agttgacaac aagcaacgag
cttcaacagc ttgaggatgt
4081 tatcaaaaat caactctgtg cagaatctca tgttgatttt
ctcagcaaat gttctcatcc
4141 attatggctt aatcaggatt tcttcatcca gcttcccttt
aaaaagaatg aaaatatcaa
4201 tcccacaaag gcaagccatt ctggaatgaa tccagagcat
ctccagttag cattaaagga
4261 atgtgatgag cttcaacaat ttgatctaat tgaaccctct
gattcacaat gggcatgtga
4321 agctttttat gttaacaaga ggtcagagca agtcagagga
aaattaaggt tagtcataaa
4381 ttatcaacca ttaaaccatt tcctccaaga tgacaagttt
cccattccaa ataagctcac
4441 actcttctct cacttatcca aagcaaagct cttttcaaaa
tttgatctta agtcaggttt
4501 ttggcaatta ggaatccatc ctaatgaaag accaaaaaca
gggttttgca ttcctgatag
4561 acactttcaa tggaaggtca tgccattcgg tcttaaaaca
gccccttctt tgttccaaaa
4621 agccatgatc aaaatcttcc agcccatcct tttttcagct
ttggtctaca ttgatgatat
4681 ccttcttttt tctgaaacac tggaagatca cataaaattg
cttaaccagt tcataagttt
4741 ggtaaaaaaa tttggagtca tgttatcggc aaaaaagatg
atccttgctc aaaataaaat
4801 ccaattttta ggaatggatt ttgctgatgg aactttttca
cctgctggtc acatctcttt
4861 ggaactccaa aagtttcctg atacaaatct ctcagtaaaa
cagatacaac aatttcttgg
4921 cattgttaat tatatcagag attttattcc agaagttact
gagcatattt cccctcttag
4981 tgatatgtta aagaagaaac caccggcatg gggaaaatgt
caagataatg cagtcaagca
5041 attgaagcaa ctggctcaac aagtcaaatc attacacatc
ccttctgaag gaaagaaaat
5101 acttcaaact gatgccagtg atcagtattg gagtgctgta
ctattagagg aacataatgg
5161 caaaaggaaa atctgtggat ttgcaagtgg aaaatttaag
gtctctgaac aacattatca
5221 ttccacattc aaagagatcc ttgctgtcaa gaatggaatt
aaaaagttta atttcttctt
5281 gatccatacc aactttttgg ttgaaatgga catgagagca
tttccaaaga tgatcaggtt
5341 aaatcctaag attgttccta attctcagtt gctacggtgg
gcacaatggt tttctcccta
5401 ccaatttgag gtaaaacatt taaagggaaa ggacaatatc
cttgctgatt tcctatcaag
5461 gccacatgaa ttttcacaaa ggcttaagaa ttcacccaag
gttcttatgt ttcaaaggaa
5521 gacaagatca aactcaacaa aaagcaaggg tgactcaagc
caaagtacag gatcaagtta
5581 taaattatct cataatctcc ctgaaaaccc tccggaagct
tttgatctag attatccatg
5641 ggatacgtct gtttttctag aaagaagaac attctatgaa
ctacaggttt tcaagaaata
5701 tggaggatct attctaaggc cttttggagt tgatccagaa
tatccatttg ctcacatctt
5761 tatacctaat cctacagatt tctctgaaga tttattatgg
atgttttggt atctgctcaa
5821 tcatttccac atcctcatgg aattcaggtg cagtaaattc
agcaagtttg atcaagttaa
5881 tccatggatg atgaagttct tattatggtt caataatcat
aattattgga cttcattatt
5941 caagtgcatg aagggaataa agaaatatgt agtaatttgg
ttttacagac cagtaaatta
6001 ctaccaaggc aagctttgtg ctttacccca ttcaagtatt
gtgaagtgga atcatgtctc
6061 tgttttaaat gatgaagatg aatactctga gctacaaaga
ttcatttttc aagagaacaa
6121 gtgtattccg aaagaaatat ggccaggatc cttaggcagt
tggaattatg gaaattcaga
6181 tcatcctcat ggtcaatgga ttagagatgc acttagggaa
tatcgagaaa tgaatgatta
6241 ctttcaagat gcacaagatc catatcctgc ttattctaaa
gttgatctca ctcaagaaga
6301 actaaacacc ttacgtatca cgcgatcgta tggtagtagt
tctgaagatg cagatatggt
6361 aaaaagaaat atttacacag tccaatccaa tatagtcaag
gattctccaa gaaaaagaaa
6421 agggaaagca aaatcaaaat catccaccag aagcgaaaaa
agaagagcta agaacaaatg
6481 caaatatcgg agtcttcatg gagaagattg gtggattgaa
ttgggatatt ctacaaagcc
6541 atcaaccccc tcatggacac aggacagctc atcagaacca
tgtgtctaaa gcacgcgtaa
6601 aaaggatagg aaggaatcca cttttcagaa gtggtcctat
gtatctaaag cacgcgtgaa
6661 gaagataaga gggaatccac ttttcagtag tggcttacta
ctttaaataa agtttgtcta
6721 gtctacttct gtctttatta aaagtaagga atctcttgct
ttttctattt tggcattttg
6781 taataatgct ctgtccacta tcgagtctgt attattaagt
atgataagtg tgctgtcatg
6841 atgtaagtgc ttacgtcttg agccatagag attgcctata
taaggtaacc tcactagttg
6901 ttttcaggca gaaccaactt tcctttgtaa aatattatca
tcaataaaat gtttgtgtga
6961 ataactctct tgtttccaaa ctctcaaaat ggtagttcgg
tcctaatatt aaattgaagg
7021 tgattactct ataagagtga ttactgaaga tagtaggtca
gattaaggtt attgacttgg
7081 tattatggct gtatgatgcc gtgttaagcc cagtagtcta
acaaaaacat ctgatctagt
7141 aagcctcagt ttaatcagaa ttctcttata ggttcaatct
gataattcct tcttcctgca
7201 agtat
//